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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46498705_46499167_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46498705 - 46499167
Intron Length:
463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTCCT
5'SS Class:
major
3'SS Sequence:
TTCCTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
TCTTTCACAACT
Flanking Amino Acid:
SDIETCFGEEGANLIVQSRA
Intron Amino Acid Position:
550

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
69.9
40.2
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
86.4
0.82
0.7
80.4
31.6
Minor 5ss
43
-0.8
2.8
60.4
43.9
Minor BPS
59.7
0.38
1.8
80.84
40.8

Associated Gene:

Gene:
ALB
Ensembl Gene ID:
ENSAPLG00000010999
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011533
46489195 - 46499224
10030