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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46514170_46515665_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46514170 - 46515665
Intron Length:
1496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTATTG
Flanking Amino Acid:
KALPRSYWDIEEKNSIGQRF
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
87.1
30
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.8
0.89
0.7
87.9
29.4
Minor 5ss
43
-0.8
2.9
57.2
47.1
Minor BPS
55.6
0.04
1.9
67.89
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011956
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012461
46513839 - 46533197
19359