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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46515727_46515975_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46515727 - 46515975
Intron Length:
249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTCTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ACATCTTTATCG
Flanking Amino Acid:
SQLQENNFKAIAMIMFAQYV
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
80.8
34.4
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
79.1
0.65
0.9
73.9
36.8
Minor 5ss
44.3
-0.6
2.9
62.8
41.9
Minor BPS
56.8
0.08
1.7
58.24
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011956
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012461
46513839 - 46533197
19359