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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46517291_46517835_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46517291 - 46517835
Intron Length:
545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
CTCTCTGTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTATTCTGAAAG
Flanking Amino Acid:
YSQNQHSLTGYFIYEISRRH
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
78.7
29.8
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
78
0.63
0.8
76.4
32.2
Minor 5ss
36.9
-1.5
2.7
44
38.6
Minor BPS
60.3
0.19
1.6
66.48
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011956
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012461
46513839 - 46533197
19359