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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46517984_46518885_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46517984 - 46518885
Intron Length:
902

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGACAT
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTCTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGGCCTTTAACA
Flanking Amino Acid:
HNLEECFRRQAPKVVKPVRE
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
73.4
37.3
Major BPS
100
1.24
0.5
100
0
Major PPT
77.3
0.61
0.9
70.8
39.2
Minor 5ss
39.7
-1.2
3.1
56
48.1
Minor BPS
71.8
0.68
1.2
73.61
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011956
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012461
46513839 - 46533197
19359