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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46524968_46525605_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46524968 - 46525605
Intron Length:
638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGACAT
5'SS Class:
major
3'SS Sequence:
GCTTTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAG
U12 Branch Point Sequence:
TCCAGGTTCACA
Flanking Amino Acid:
EEEKLQHKKQEMLINLIKYK
Intron Amino Acid Position:
557

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
65.3
40.6
Major BPS
53.7
0.09
1.5
69
38.9
Major PPT
86.1
0.81
0.8
80.6
31.4
Minor 5ss
34.9
-1.7
3.2
45
43.6
Minor BPS
39.3
-0.8
2.6
50.92
46.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011956
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012461
46513839 - 46533197
19359