Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46525739_46532425_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

46525739 - 46532425

Intron Length:

6687

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATTGTTT

5'SS Class:

major

3'SS Sequence:

TTATTCTGTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTCAT

U12 Branch Point Sequence:

TTCTTCTTCATT

Flanking Amino Acid:

ENREACFVKED*

Intron Amino Acid Position:

602

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.5

0.58

74.1

36.8

Major BPS

87.4

0.93

0.9

87.9

29.5

Major PPT

81.2

0.7

0.9

77.2

36.8

Minor 5ss

48.8

-0.1

3.1

73.2

43.6

Minor BPS

66.4

0.6

1.7

82.74

39.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011956

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012461

46513839 - 46533197

19359