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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46532677_46533754_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46532677 - 46533754
Intron Length:
1078

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCCAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTAAATCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTACTTTTAAAT
Flanking Amino Acid:
FALYIIHASGEKKQLRSGDI
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
68.8
43.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
76.3
0.59
0.9
67.4
42.4
Minor 5ss
37.2
-1.4
3
46.7
48.6
Minor BPS
66.1
0.59
1.3
79.29
36.2

Associated Gene:

Gene:
RASSF6
Ensembl Gene ID:
ENSAPLG00000012335
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012858
46531424 - 46545165
13742