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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46535816_46537793_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46535816 - 46537793
Intron Length:
1978

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
AAATAATTAACT
Flanking Amino Acid:
TENVGLFPGRSGMTRWGEFD
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
77.6
33.1
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
86.8
0.83
0.9
84.6
36
Minor 5ss
38.5
-1.3
3.4
55.5
48.6
Minor BPS
59.4
0.37
1.8
75.63
39.8

Associated Gene:

Gene:
RASSF6
Ensembl Gene ID:
ENSAPLG00000012335
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012858
46531424 - 46545165
13742