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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46537946_46539151_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46537946 - 46539151
Intron Length:
1206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
GCAGCATTAATT
Flanking Amino Acid:
QQNLQLSLNQREGSVPFIEG
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88
25.3
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
93.7
0.98
0.6
88.2
29.1
Minor 5ss
38
-1.3
3.1
51.9
44.9
Minor BPS
54.1
0.21
1.7
66.65
44

Associated Gene:

Gene:
RASSF6
Ensembl Gene ID:
ENSAPLG00000012335
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012858
46531424 - 46545165
13742