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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46539231_46545075_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46539231 - 46545075
Intron Length:
5845

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTATTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
VAINEEKFITREQLSSLLKT
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
86.4
23.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
84.5
0.78
0.7
78
35.1
Minor 5ss
41.2
-1
3
57.8
46.8
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
RASSF6
Ensembl Gene ID:
ENSAPLG00000012335
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012858
46531424 - 46545165
13742