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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46579458_46580258_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46579458 - 46580258
Intron Length:
801

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAA
U12 Branch Point Sequence:
CTAAATAGACCT
Flanking Amino Acid:
SGPHCKNVEVIATLKDGREV
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
87.3
27
Major BPS
65.2
0.38
0.9
65.5
27.9
Major PPT
85.2
0.79
0.8
79.9
32.1
Minor 5ss
41.1
-1
3.4
62.8
42
Minor BPS
37.6
-0.8
1.9
52.42
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023047
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027853
46578300 - 46581910
3611