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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46580343_46581073_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46580343 - 46581073
Intron Length:
731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TCCATTTTATTT
Flanking Amino Acid:
VKLIIKAILDKANTRPDNLS
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
0.9
76.8
33.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
84.9
0.78
0.7
77.9
36.1
Minor 5ss
32.2
-2
3
41.4
39.1
Minor BPS
49.4
0.04
1.6
63.02
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023047
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027853
46578300 - 46581910
3611