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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46595331_46596097_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46595331 - 46596097
Intron Length:
767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGCTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
TTCTGCTTATAG
Flanking Amino Acid:
LLLISVALSQGRSLVRMGNE
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
77.6
32.8
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
82.1
0.72
0.8
76.8
32
Minor 5ss
35.6
-1.6
3.3
46.2
49.1
Minor BPS
48.6
-0.2
2.2
60.22
47.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012692
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013206
46595270 - 46597520
2251