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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46596234_46596830_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46596234 - 46596830
Intron Length:
597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
GTTTCCTGACTT
Flanking Amino Acid:
SGPHCKNVEIIATLKDNREV
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
80.9
31.3
Major BPS
75.1
0.62
1
65.6
41
Major PPT
91.4
0.93
0.6
87.5
22.7
Minor 5ss
37.8
-1.4
3.3
55.2
42.1
Minor BPS
63.5
0.5
1.8
81.73
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012692
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013206
46595270 - 46597520
2251