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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46596915_46597489_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46596915 - 46597489
Intron Length:
575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CATCTCTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CATCTCTTAACA
Flanking Amino Acid:
VQRIVKAILAKAQLNSDAPL
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
75.5
40.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74.3
0.55
0.9
69.4
35.2
Minor 5ss
39.5
-1.2
3
50.7
39.9
Minor BPS
72
0.69
1.2
73.71
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012692
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013206
46595270 - 46597520
2251