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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46638795_46640629_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46638795 - 46640629
Intron Length:
1835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCCTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACATTAT
U12 Branch Point Sequence:
CTTTCCTCACAG
Flanking Amino Acid:
LILAFMGNFPEMMLAAELRC
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
63.3
0.33
1.1
54
41.2
Major PPT
81.4
0.71
0.7
75.7
26.5
Minor 5ss
35.3
-1.7
3.1
46.4
43
Minor BPS
49.4
-0.1
2
60.81
46.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021960
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031403
46638542 - 46641000
2459