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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46664326_46671265_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46664326 - 46671265
Intron Length:
6940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGGGC
5'SS Class:
major
3'SS Sequence:
TTTGTCTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAG
U12 Branch Point Sequence:
TTTGTCTTTATA
Flanking Amino Acid:
SASGSPRSAASDEATVISGT
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
65.7
40
Major BPS
72.5
0.56
1.5
71.7
44.6
Major PPT
85.4
0.8
0.7
80.6
31.5
Minor 5ss
28.5
-2.5
3.6
41.2
45.5
Minor BPS
61.5
0.35
1.7
74.21
37.7

Associated Gene:

Gene:
MTHFD2L
Ensembl Gene ID:
ENSAPLG00000012869
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013396
46663295 - 46700572
37278