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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46671451_46672014_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46671451 - 46672014
Intron Length:
564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
ATTTCCTGATAA
Flanking Amino Acid:
RNKVKAATAVGISSEIILRP
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82.4
29.9
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
81.9
0.72
0.9
81.6
34.7
Minor 5ss
42.1
-0.9
2.4
52.1
44.5
Minor BPS
57.3
0.23
1.8
72.51
38.8

Associated Gene:

Gene:
MTHFD2L
Ensembl Gene ID:
ENSAPLG00000012869
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013396
46663295 - 46700572
37278