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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46672138_46676863_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46672138 - 46676863
Intron Length:
4726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CAATGTTTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TGTAATTTGAAA
Flanking Amino Acid:
SGVLVQLPLPDHIDERTVCN
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
70.4
0.46
1
61.3
44.1
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
49
-0
1.7
62.12
37.3

Associated Gene:

Gene:
MTHFD2L
Ensembl Gene ID:
ENSAPLG00000012869
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013396
46663295 - 46700572
37278