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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46677857_46683580_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46677857 - 46683580
Intron Length:
5724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGACGG
5'SS Class:
major
3'SS Sequence:
TTTTGCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TATCAATTAATT
Flanking Amino Acid:
HTDGEHERPGGDATVTITHR
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
57.7
47
Major BPS
83
0.82
0.8
82
24.9
Major PPT
88.2
0.86
0.7
85.4
29.3
Minor 5ss
31.8
-2.1
3.1
40.4
45.2
Minor BPS
58.1
0.33
1.8
77.53
38.1

Associated Gene:

Gene:
MTHFD2L
Ensembl Gene ID:
ENSAPLG00000012869
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013396
46663295 - 46700572
37278