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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46683674_46690229_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46683674 - 46690229
Intron Length:
6556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATATTA
5'SS Class:
strong_major
3'SS Sequence:
TTGATGATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TGTTAATCAAAT
Flanking Amino Acid:
QLADIVIVAAGIPKLITTDM
Intron Amino Acid Position:
382

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
79.7
29.1
Major BPS
84.4
0.85
1
84
34.5
Major PPT
72.6
0.51
1
62.8
47.1
Minor 5ss
41.6
-0.9
3.1
56.5
47.5
Minor BPS
48.4
-0
2.1
73.47
42.1

Associated Gene:

Gene:
MTHFD2L
Ensembl Gene ID:
ENSAPLG00000012869
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013396
46663295 - 46700572
37278