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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4669314_4674049_R

Intron Information:

Intron Rank:
144597
Intron Class:
major
Intron Phase:
Intron Coordinates:
4669314 - 4674049
Intron Length:
4736

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAACCTT
5'SS Class:
major
3'SS Sequence:
AATATCATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
ATATTCTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
71.2
40.6
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
72.6
0.51
1
67.7
42.5
Minor 5ss
37.7
-1.4
3.4
55.8
48.4
Minor BPS
83.9
1.14
1
91.17
31.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025134
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037744
4668760 - 4674300
5541