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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46736667_46737135_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46736667 - 46737135
Intron Length:
469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
AATCTCTCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
AATCTCTCCACA
Flanking Amino Acid:
GEMENCTTALIQTENSPRVA
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
84.3
26.3
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
72.6
0.51
0.9
65.7
35.1
Minor 5ss
38
-1.4
3.3
49.4
41.3
Minor BPS
47.4
-0.2
1.9
60.63
38.9

Associated Gene:

Gene:
EREG
Ensembl Gene ID:
ENSAPLG00000012982
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013536
46734652 - 46739049
4398