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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46737260_46737834_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46737260 - 46737834
Intron Length:
575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGACA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCATCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
ATTTCTCTAATT
Flanking Amino Acid:
YIVDLDEHYCRCDVGFSGVR
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
74
36.1
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
80.4
0.68
0.8
77.3
30.2
Minor 5ss
38.6
-1.3
3
49.3
46.7
Minor BPS
70.5
0.72
1.6
87
32.2

Associated Gene:

Gene:
EREG
Ensembl Gene ID:
ENSAPLG00000012982
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013536
46734652 - 46739049
4398