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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46737982_46738988_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46737982 - 46738988
Intron Length:
1007

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTACTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
CTTTCCAGAACT
Flanking Amino Acid:
ISIASYYICRRYRHKKRHTN
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
28.9
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
84.3
0.77
0.8
81.4
29.4
Minor 5ss
30.7
-2.2
3.3
40.8
45.7
Minor BPS
66.4
0.59
1.8
86.19
39.4

Associated Gene:

Gene:
EREG
Ensembl Gene ID:
ENSAPLG00000012982
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013536
46734652 - 46739049
4398