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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46755797_46758210_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46755797 - 46758210
Intron Length:
2414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCGG
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAGCAT
U12 Branch Point Sequence:
CATTACTAGACT
Flanking Amino Acid:
HQYIVDDLIRVEPVVKPKTT
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
60.4
45.8
Major BPS
63.3
0.33
1.5
74
41.2
Major PPT
89.9
0.9
0.7
88.2
29.1
Minor 5ss
24.7
-2.9
3
29.5
43.3
Minor BPS
53.7
0.2
1.9
72.97
43.9

Associated Gene:

Gene:
AREG
Ensembl Gene ID:
ENSAPLG00000017459
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047550
46753460 - 46763476
10017
ENSAPLT00000044046
46754583 - 46763476
8894
ENSAPLT00000013597
46755475 - 46770448
14974