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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46760754_46770350_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
46760754 - 46770350
Intron Length:
9597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TCCTGATTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TTCTCCTGATTT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
73.4
37.3
Major BPS
75.1
0.62
1
65.6
41
Major PPT
75.9
0.58
0.8
73.3
36.1
Minor 5ss
38.9
-1.2
2.8
48
47.7
Minor BPS
62.9
0.48
1.7
80.66
41.5

Associated Gene:

Gene:
AREG
Ensembl Gene ID:
ENSAPLG00000017459
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013597
46755475 - 46770448
14974