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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46797868_46808662_F

Intron Information:

Intron Rank:
124745
Intron Class:
major
Intron Phase:
Intron Coordinates:
46797868 - 46808662
Intron Length:
10795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTGCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTAACAT
U12 Branch Point Sequence:
CATTCAGAGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1.2
90.9
28.7
Major BPS
58.7
0.22
1.2
67
38
Major PPT
85.6
0.8
0.8
80.2
31.8
Minor 5ss
43
-0.8
2.9
59.7
38
Minor BPS
42.8
-0.4
2.5
64.86
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017248
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036871
46797531 - 46822341
24811
ENSAPLT00000035695
46797531 - 46822221
24691
ENSAPLT00000032533
46797531 - 46825634
28104