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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46808829_46822211_F

Intron Information:

Intron Rank:
124748
Intron Class:
major
Intron Phase:
Intron Coordinates:
46808829 - 46822211
Intron Length:
13383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCACCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
GTTTCATTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
75.9
35.2
Major BPS
80
0.75
1
78.6
31
Major PPT
76.3
0.59
0.9
70.1
35.2
Minor 5ss
33.7
-1.9
2.9
38
41
Minor BPS
74.1
0.75
1.5
81.67
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017248
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035695
46797531 - 46822221
24691