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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46848092_46848873_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46848092 - 46848873
Intron Length:
782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAACTTG
5'SS Class:
major
3'SS Sequence:
TTGTTTTCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TAAAACTAAAAT
Flanking Amino Acid:
GLEHNNELQKELEMLRTQIQ
Intron Amino Acid Position:
744

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
68.2
39.6
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
72.8
0.51
1
74.8
33.9
Minor 5ss
41.4
-1
3.1
55
49.2
Minor BPS
47.4
-0.1
1.9
65.76
43.6

Associated Gene:

Gene:
USO1
Ensembl Gene ID:
ENSAPLG00000013128
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026678
46844514 - 46876119
31606
ENSAPLT00000020365
46844557 - 46872683
28127
ENSAPLT00000013748
46843698 - 46876119
32422
ENSAPLT00000045972
46844557 - 46872683
28127
ENSAPLT00000036579
46844557 - 46872683
28127