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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46848961_46849451_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46848961 - 46849451
Intron Length:
491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGTCT
5'SS Class:
strong_major
3'SS Sequence:
GTTGCTATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTGAT
U12 Branch Point Sequence:
GTCTGATTGATT
Flanking Amino Acid:
REKDSLIEKLKPLQLETGTE
Intron Amino Acid Position:
715

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
74.8
35.7
Major BPS
70.8
0.52
1.2
63.4
44.3
Major PPT
77
0.61
0.9
69.5
40.5
Minor 5ss
39.5
-1.2
3.3
53.8
44.4
Minor BPS
48.5
-0
2.1
68.68
42.6

Associated Gene:

Gene:
USO1
Ensembl Gene ID:
ENSAPLG00000013128
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026678
46844514 - 46876119
31606
ENSAPLT00000020365
46844557 - 46872683
28127
ENSAPLT00000013748
46843698 - 46876119
32422
ENSAPLT00000045972
46844557 - 46872683
28127
ENSAPLT00000036579
46844557 - 46872683
28127