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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46851064_46852015_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46851064 - 46852015
Intron Length:
952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TTTCTTTTCACA
Flanking Amino Acid:
THYKKVIREQDQELEELKQQ
Intron Amino Acid Position:
614

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
73.3
36.4
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
90.8
0.92
0.6
87.1
23.5
Minor 5ss
30.8
-2.2
3.3
41.8
45
Minor BPS
61.7
0.36
1.7
75.92
35.5

Associated Gene:

Gene:
USO1
Ensembl Gene ID:
ENSAPLG00000013128
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045972
46844557 - 46872683
28127
ENSAPLT00000013748
46843698 - 46876119
32422
ENSAPLT00000036579
46844557 - 46872683
28127
ENSAPLT00000026678
46844514 - 46876119
31606
ENSAPLT00000020365
46844557 - 46872683
28127