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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46852138_46852831_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46852138 - 46852831
Intron Length:
694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATGT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTGTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAAGA
Flanking Amino Acid:
EFTKLVKELEGVISKAIYKS
Intron Amino Acid Position:
573

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
77.6
33.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
70.6
0.46
1
65.7
39.9
Minor 5ss
34.2
-1.8
3.2
47.6
47.9
Minor BPS
73
0.72
1.5
82.25
33.1

Associated Gene:

Gene:
USO1
Ensembl Gene ID:
ENSAPLG00000013128
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036579
46844557 - 46872683
28127
ENSAPLT00000026678
46844514 - 46876119
31606
ENSAPLT00000020365
46844557 - 46872683
28127
ENSAPLT00000013748
46843698 - 46876119
32422
ENSAPLT00000045972
46844557 - 46872683
28127