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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46853750_46854409_R

Intron Information:

Intron Rank:
15
Intron Class:
minor
Intron Phase:
0
Intron Coordinates:
46853750 - 46854409
Intron Length:
660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTATCCTTG
5'SS Class:
strong_minor
3'SS Sequence:
ACAAGAGCTCTAG|C
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
ATCTCAA
U12 Branch Point Sequence:
AAATCCTTAACA
Flanking Amino Acid:
FLHNPANIPFLTGQIAENLG
Intron Amino Acid Position:
473

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.4
-0
1.2
48
43
Major BPS
76.9
0.67
0.8
77.7
26.1
Major PPT
49.6
-0
1
36.8
40
Minor 5ss
90.7
1.37
1.1
87
29.8
Minor BPS
82
1
1
80.57
34.1

Associated Gene:

Gene:
USO1
Ensembl Gene ID:
ENSAPLG00000013128
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026678
46844514 - 46876119
31606
ENSAPLT00000020365
46844557 - 46872683
28127
ENSAPLT00000013748
46843698 - 46876119
32422
ENSAPLT00000045972
46844557 - 46872683
28127
ENSAPLT00000036579
46844557 - 46872683
28127