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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46858025_46858845_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46858025 - 46858845
Intron Length:
821

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGCCC
5'SS Class:
major
3'SS Sequence:
GTATAACTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GTGTGTATAACT
Flanking Amino Acid:
LQQCTNILSQGDKIDRRGSK
Intron Amino Acid Position:
429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
1
63.1
41.4
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
71.3
0.48
1
63.2
42.7
Minor 5ss
38.1
-1.3
3.2
51.2
45.5
Minor BPS
51.4
0.12
2
73.35
43.6

Associated Gene:

Gene:
USO1
Ensembl Gene ID:
ENSAPLG00000013128
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026678
46844514 - 46876119
31606
ENSAPLT00000013748
46843698 - 46876119
32422
ENSAPLT00000045972
46844557 - 46872683
28127