Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46859058_46859314_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

46859058 - 46859314

Intron Length:

257

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTACGTAAG

5'SS Class:

major

3'SS Sequence:

CCCCTTTTGGTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAT

U12 Branch Point Sequence:

TCATTTGTACCT

Flanking Amino Acid:

VSTLLPSTIDATGNSVSAGQ

Intron Amino Acid Position:

358

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.4

0.65

1.1

69.4

42.9

Major BPS

84.4

0.85

1.1

34.5

Major PPT

69.9

0.45

0.9

67.8

32.2

Minor 5ss

34.5

-1.8

2.9

42.4

44.5

Minor BPS

46.8

-0.1

2.2

67.23

44.3

Associated Gene:

Gene:

USO1

Ensembl Gene ID:

ENSAPLG00000013128

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013748

46843698 - 46876119

32422

ENSAPLT00000045972

46844557 - 46872683

28127

ENSAPLT00000036579

46844557 - 46872683

28127

ENSAPLT00000026678

46844514 - 46876119

31606

ENSAPLT00000020365

46844557 - 46872683

28127