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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46859470_46859853_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46859470 - 46859853
Intron Length:
384

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TATTACCAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTACCA
Flanking Amino Acid:
ASVNAPSNPPRPAIVVLLMS
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.7
1.17
0.7
98.4
4.81
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
61.4
0.26
1
56.7
38.5
Minor 5ss
28.3
-2.5
4.2
48.7
47.5
Minor BPS
63.6
0.42
1.9
80.01
35.9

Associated Gene:

Gene:
USO1
Ensembl Gene ID:
ENSAPLG00000013128
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036579
46844557 - 46872683
28127
ENSAPLT00000026678
46844514 - 46876119
31606
ENSAPLT00000020365
46844557 - 46872683
28127
ENSAPLT00000013748
46843698 - 46876119
32422
ENSAPLT00000045972
46844557 - 46872683
28127