About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46860430_46861161_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46860430 - 46861161
Intron Length:
732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACATAT
U12 Branch Point Sequence:
CTCTCCTTACAT
Flanking Amino Acid:
KVTNLHLMLQLVRVLVSPTN
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
74
36.4
Major BPS
66.4
0.41
1
61.3
37
Major PPT
82.4
0.73
0.7
74.9
30.4
Minor 5ss
33
-1.9
3.3
47.4
48
Minor BPS
62
0.46
1.8
76.73
45.7

Associated Gene:

Gene:
USO1
Ensembl Gene ID:
ENSAPLG00000013128
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026678
46844514 - 46876119
31606
ENSAPLT00000020365
46844557 - 46872683
28127
ENSAPLT00000013748
46843698 - 46876119
32422
ENSAPLT00000045972
46844557 - 46872683
28127
ENSAPLT00000036579
46844557 - 46872683
28127