Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46863184_46863838_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

46863184 - 46863838

Intron Length:

655

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTAAGTATA

5'SS Class:

strong_major

3'SS Sequence:

TCTTTCTACCAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

AAGTTTTTAATC

Flanking Amino Acid:

ADSREVIRNDGVLLLQQLTK

Intron Amino Acid Position:

130

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.87

0.9

89.1

24.1

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

68.4

0.41

1.1

68.1

36.9

Minor 5ss

41.7

-0.9

2.8

41.5

Minor BPS

65.4

0.46

1.2

64.98

34.9

Associated Gene:

Gene:

USO1

Ensembl Gene ID:

ENSAPLG00000013128

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020365

46844557 - 46872683

28127

ENSAPLT00000013748

46843698 - 46876119

32422

ENSAPLT00000045972

46844557 - 46872683

28127

ENSAPLT00000036579

46844557 - 46872683

28127

ENSAPLT00000026678

46844514 - 46876119

31606