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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46864151_46865053_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46864151 - 46865053
Intron Length:
903

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTATCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TACTACTTAATT
Flanking Amino Acid:
NVTLLLTLVEEFDFHVRWPG
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
81.4
32.7
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
85.9
0.81
0.8
80.5
31.3
Minor 5ss
39.7
-1.2
2.9
51.2
45.7
Minor BPS
72.1
0.77
1.4
82.21
39.2

Associated Gene:

Gene:
USO1
Ensembl Gene ID:
ENSAPLG00000013128
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026678
46844514 - 46876119
31606
ENSAPLT00000020365
46844557 - 46872683
28127
ENSAPLT00000013748
46843698 - 46876119
32422
ENSAPLT00000045972
46844557 - 46872683
28127
ENSAPLT00000036579
46844557 - 46872683
28127