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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46870188_46871607_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46870188 - 46871607
Intron Length:
1420

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTTGC
5'SS Class:
major
3'SS Sequence:
CTTTTATTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
GTTCTTTTATTT
Flanking Amino Acid:
VCDEDQMEARHSDSEIIGYA
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1
63.3
38.1
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
89.7
0.89
0.7
84.8
28.7
Minor 5ss
37.3
-1.4
2.9
49.2
41.2
Minor BPS
57
0.3
1.5
73.36
38

Associated Gene:

Gene:
USO1
Ensembl Gene ID:
ENSAPLG00000013128
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045972
46844557 - 46872683
28127
ENSAPLT00000036579
46844557 - 46872683
28127
ENSAPLT00000020365
46844557 - 46872683
28127