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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46875894_46875991_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
46875894 - 46875991
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
GCTGGCTGACGG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.9
82.7
29.3
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
75.5
0.57
0.9
69.9
36.6
Minor 5ss
17.3
-3.8
3.5
25.7
37
Minor BPS
35.4
-1.2
2.2
35.99
45.6

Associated Gene:

Gene:
USO1
Ensembl Gene ID:
ENSAPLG00000013128
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026678
46844514 - 46876119
31606
ENSAPLT00000013748
46843698 - 46876119
32422