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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46876079_46881513_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46876079 - 46881513
Intron Length:
5435

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TTG|GCCGGGGGG
5'SS Class:
major
3'SS Sequence:
CTGCCTCCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCGTGAC
U12 Branch Point Sequence:
GTTCCCGTGACT
Flanking Amino Acid:
SSGPQGAKSLIQKLCDRVAS
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.4
0.36
1.2
54.5
39.7
Major BPS
48.6
-0
1.2
40.4
40
Major PPT
72.4
0.5
0.8
69.4
31.3
Minor 5ss
12.5
-4.3
3.7
16.8
31.9
Minor BPS
60.5
0.41
2.1
81.88
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023742
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038370
46875923 - 46881576
5654