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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46888275_46892485_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46888275 - 46892485
Intron Length:
4211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCTC
5'SS Class:
major
3'SS Sequence:
TCTTCACTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTCATTACAT
Flanking Amino Acid:
LLNKAPDFLHRFYGRNSSYV
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
69.7
40.9
Major BPS
100
1.24
0.5
100
0
Major PPT
83.7
0.76
0.8
77.7
29.8
Minor 5ss
35.4
-1.7
3.4
50.6
45.9
Minor BPS
58.1
0.33
2
81.23
39.8

Associated Gene:

Gene:
G3BP2
Ensembl Gene ID:
ENSAPLG00000013777
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038061
46881120 - 46906970
25851
ENSAPLT00000014407
46888156 - 46906336
18181
ENSAPLT00000046554
46881120 - 46906970
25851