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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46892568_46893468_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46892568 - 46893468
Intron Length:
901

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGCGTATC
5'SS Class:
major
3'SS Sequence:
TGTCTACTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
ATGTAGTTAACA
Flanking Amino Acid:
KPQEAVYGQAEIHKKVMSLQ
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.3
0.31
1.1
65.8
39.9
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
75.6
0.58
0.9
67
39.5
Minor 5ss
36.7
-1.5
3.2
54.9
42.5
Minor BPS
55
0.15
2.2
70.74
41.3

Associated Gene:

Gene:
G3BP2
Ensembl Gene ID:
ENSAPLG00000013777
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046554
46881120 - 46906970
25851
ENSAPLT00000038061
46881120 - 46906970
25851
ENSAPLT00000014407
46888156 - 46906336
18181