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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46893643_46894520_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46893643 - 46894520
Intron Length:
878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TGCTCTTTTACA
Flanking Amino Acid:
FMQTFVLAPEGSVPNKFYVH
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.8
88.1
25.2
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
85
0.79
0.8
79.3
32.7
Minor 5ss
42
-0.9
2.8
55.1
35.9
Minor BPS
64.8
0.46
1.6
71.82
40.2

Associated Gene:

Gene:
G3BP2
Ensembl Gene ID:
ENSAPLG00000013777
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046554
46881120 - 46906970
25851
ENSAPLT00000038061
46881120 - 46906970
25851
ENSAPLT00000014407
46888156 - 46906336
18181