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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46897627_46903019_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46897627 - 46903019
Intron Length:
5393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TGGCATTTAACA
Flanking Amino Acid:
PVSLPQEPPKPRVETKPEAQ
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
1.1
79.6
29.7
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
82.5
0.73
0.8
80
31.9
Minor 5ss
36.9
-1.5
2.7
44.2
43.6
Minor BPS
59.9
0.31
1.5
66.71
39.4

Associated Gene:

Gene:
G3BP2
Ensembl Gene ID:
ENSAPLG00000013777
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038061
46881120 - 46906970
25851