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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46904399_46904599_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46904399 - 46904599
Intron Length:
201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TGTGCTTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTTAA
U12 Branch Point Sequence:
TGTGCTTTCACA
Flanking Amino Acid:
DESELKEFFMSFGNVVELRI
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
69.9
41.1
Major BPS
65.9
0.4
1
57.6
39
Major PPT
78
0.63
0.9
72
38
Minor 5ss
37.4
-1.4
2.7
42.4
38.3
Minor BPS
59.1
0.28
1.9
71.5
41.1

Associated Gene:

Gene:
G3BP2
Ensembl Gene ID:
ENSAPLG00000013777
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038061
46881120 - 46906970
25851
ENSAPLT00000014407
46888156 - 46906336
18181
ENSAPLT00000046554
46881120 - 46906970
25851