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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46905849_46905893_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
46905849 - 46905893
Intron Length:
45

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGGCATGA
5'SS Class:
weak_major
3'SS Sequence:
CCCCCGCCGAGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GCATGAT
U12 Branch Point Sequence:
TGATGCGAGACC
Flanking Amino Acid:
GPGGPRGIVGGGMAQKLGSG
Intron Amino Acid Position:
443

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55
0.12
1.2
48.4
38.9
Major BPS
54.3
0.11
1.4
47.7
45.7
Major PPT
44.7
-0.3
1.6
44.6
30.9
Minor 5ss
36.2
-1.6
3.3
44.1
45.6
Minor BPS
40.6
-0.7
2.5
54.82
43.6

Associated Gene:

Gene:
G3BP2
Ensembl Gene ID:
ENSAPLG00000013777
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014407
46888156 - 46906336
18181